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Pregled bibliografske jedinice broj: 409854

Protein Data Bank Graphics Generator on Grid


Bojović, Viktor; Lučić, Bono; Skala, Karolj
Protein Data Bank Graphics Generator on Grid // Proceedings Vol. I. MEET&GVS 32rd International Convention MIPRO 2009 / Biljanović, Petar ; Skala, Karolj (ur.).
Rijeka: Croatian Society for Information and Communication Technology, Electronics and Microelectronics - MIPRO, 2009. str. 341-345 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni)


CROSBI ID: 409854 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Protein Data Bank Graphics Generator on Grid

Autori
Bojović, Viktor ; Lučić, Bono ; Skala, Karolj

Vrsta, podvrsta i kategorija rada
Radovi u zbornicima skupova, cjeloviti rad (in extenso), znanstveni

Izvornik
Proceedings Vol. I. MEET&GVS 32rd International Convention MIPRO 2009 / Biljanović, Petar ; Skala, Karolj - Rijeka : Croatian Society for Information and Communication Technology, Electronics and Microelectronics - MIPRO, 2009, 341-345

ISBN
978-953-233-044-1

Skup
MIPRO 2009 - 32rd International Convention on Information and Communication Technology, Electronics and Microelectronics ; Grid and Visualization Systems Conference

Mjesto i datum
Opatija, Hrvatska, 25-29.05.2009

Vrsta sudjelovanja
Predavanje

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
Protein data bank; Relational model; PostgreSQL database; JavaScripts; Computer grid; Animation rendering; POV-Ray format; Draving methods; Coloring schemes

Sažetak
Experimental data acquired from NMR, X-ray diffraction and other experimental methods are usually stored into formatted files called PDB files that can be found at [1]. Searching through PDB files and extracting or visually representing the results, usually requires a lot of programming or using a variety of software. To make these tasks easier we created the relational model of a database, and our web interface, which enables the user to send queries to database, retrieve the results, export them into ASCII text format or POV-Ray format and send them to a computer grid for rendering the animation. For the needs of software development we used 143 PDB files, a PostgreSQL database, and Perl scripts for importing the data from PDB files, a PHP interface with JavaScripts and a computer grid for animation rendering. The result is represented textually or in POV-Ray format with three drawing methods and five color schemes available and rendered. Application can be found at this address: [10].

Izvorni jezik
Engleski

Znanstvena područja
Kemija, Elektrotehnika



POVEZANOST RADA


Projekti:
098-0982562-2567 - Metode znanstvene vizualizacije (Skala, Karolj, MZOS ) ( POIROT)
098-1770495-2919 - Razvoj metoda za modeliranje svojstava bioaktivnih molekula i proteina (Lučić, Bono, MZOS ) ( POIROT)

Ustanove:
Institut "Ruđer Bošković", Zagreb

Profili:

Avatar Url Karolj Skala (autor)

Avatar Url Bono Lučić (autor)

Avatar Url Viktor Bojović (autor)


Citiraj ovu publikaciju

Bojović, Viktor; Lučić, Bono; Skala, Karolj
Protein Data Bank Graphics Generator on Grid // Proceedings Vol. I. MEET&GVS 32rd International Convention MIPRO 2009 / Biljanović, Petar ; Skala, Karolj (ur.).
Rijeka: Croatian Society for Information and Communication Technology, Electronics and Microelectronics - MIPRO, 2009. str. 341-345 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni)
Bojović, V., Lučić, B. & Skala, K. (2009) Protein Data Bank Graphics Generator on Grid. U: Biljanović, P. & Skala, K. (ur.)Proceedings Vol. I. MEET&GVS 32rd International Convention MIPRO 2009.
@article{article, year = {2009}, pages = {341-345}, keywords = {Protein data bank, Relational model, PostgreSQL database, JavaScripts, Computer grid, Animation rendering, POV-Ray format, Draving methods, Coloring schemes}, isbn = {978-953-233-044-1}, title = {Protein Data Bank Graphics Generator on Grid}, keyword = {Protein data bank, Relational model, PostgreSQL database, JavaScripts, Computer grid, Animation rendering, POV-Ray format, Draving methods, Coloring schemes}, publisher = {Croatian Society for Information and Communication Technology, Electronics and Microelectronics - MIPRO}, publisherplace = {Opatija, Hrvatska} }
@article{article, year = {2009}, pages = {341-345}, keywords = {Protein data bank, Relational model, PostgreSQL database, JavaScripts, Computer grid, Animation rendering, POV-Ray format, Draving methods, Coloring schemes}, isbn = {978-953-233-044-1}, title = {Protein Data Bank Graphics Generator on Grid}, keyword = {Protein data bank, Relational model, PostgreSQL database, JavaScripts, Computer grid, Animation rendering, POV-Ray format, Draving methods, Coloring schemes}, publisher = {Croatian Society for Information and Communication Technology, Electronics and Microelectronics - MIPRO}, publisherplace = {Opatija, Hrvatska} }




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