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Pregled bibliografske jedinice broj: 390907

Structure Prediction of Bis(amino acidato)copper(II) Complexes with a New Force Field for Molecular Modeling


Sabolović, Jasmina; Gomzi, Vjeran
Structure Prediction of Bis(amino acidato)copper(II) Complexes with a New Force Field for Molecular Modeling // Journal of Chemical Theory and Computation, 5 (2009), 7; 1940-1954 doi:10.1021/ct9000203 (međunarodna recenzija, članak, znanstveni)


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Naslov
Structure Prediction of Bis(amino acidato)copper(II) Complexes with a New Force Field for Molecular Modeling

Autori
Sabolović, Jasmina ; Gomzi, Vjeran

Izvornik
Journal of Chemical Theory and Computation (1549-9618) 5 (2009), 7; 1940-1954

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
force field parametrization; crystal simulation; copper; animo acids; complex; MM; MD

Sažetak
This article presents a new force field whose parameterization was based on experimental crystal data and quantum chemically obtained vacuum structures of a series of copper(II) complexes with aliphatic alpha-amino acids and their N-alkyl derivatives, along with the SPC/E water model. The ability of the new force field to reproduce and predict the structural properties of the copper(II) complexes in the gas phase, in simulated crystalline surroundings, and solvated in water is examined. Molecular dynamics (MD) simulations with the new force field yielded time-average structural coordinates of bis(glycinato)copper(II) [the only one of 25 modeled bis(amino acidato)copper(II) systems with published experimental structural data in aqueous solution at room temperature] within the experimental error values. The study of the cis-trans isomerization of bis(glycinato)copper(II) in aqueous medium at 300 K using the quantum chemical polarized continuum model revealed a small energy difference (5 kJ mol-1) between the solvated cis and trans minima, in line with the MD energy estimations. The new force field proved promising in predicting the association of the complexes in aqueous solution and formation of a nucleus of crystallization.

Izvorni jezik
Engleski

Znanstvena područja
Fizika, Kemija



POVEZANOST RADA


Projekti:
022-0222148-2822 - Modeliranje i međudjelovanje kompleksa prijelaznih metala i bioliganada (Sabolović, Jasmina, MZOS ) ( POIROT)
098-1191344-2860 - Proučavanje biomakromolekula računalnim metodama i razvoj novih algoritama (Tomić, Sanja, MZOS ) ( POIROT)

Ustanove:
Institut za medicinska istraživanja i medicinu rada, Zagreb,
Institut "Ruđer Bošković", Zagreb

Profili:

Avatar Url Jasmina Sabolović (autor)

Avatar Url Vjeran Gomzi (autor)

Citiraj ovu publikaciju

Sabolović, Jasmina; Gomzi, Vjeran
Structure Prediction of Bis(amino acidato)copper(II) Complexes with a New Force Field for Molecular Modeling // Journal of Chemical Theory and Computation, 5 (2009), 7; 1940-1954 doi:10.1021/ct9000203 (međunarodna recenzija, članak, znanstveni)
Sabolović, J. & Gomzi, V. (2009) Structure Prediction of Bis(amino acidato)copper(II) Complexes with a New Force Field for Molecular Modeling. Journal of Chemical Theory and Computation, 5 (7), 1940-1954 doi:10.1021/ct9000203.
@article{article, year = {2009}, pages = {1940-1954}, DOI = {10.1021/ct9000203}, keywords = {force field parametrization, crystal simulation, copper, animo acids, complex, MM, MD}, journal = {Journal of Chemical Theory and Computation}, doi = {10.1021/ct9000203}, volume = {5}, number = {7}, issn = {1549-9618}, title = {Structure Prediction of Bis(amino acidato)copper(II) Complexes with a New Force Field for Molecular Modeling}, keyword = {force field parametrization, crystal simulation, copper, animo acids, complex, MM, MD} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus


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