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Graphical representation of proteins as four-color maps and their numerical characterization


Randić, Milan; Vukičević, Damir; Pisanski, Tomaž; Vikić-Topić, Dražen; Plavšić, Dejan
Graphical representation of proteins as four-color maps and their numerical characterization // Journal of molecular graphics & modelling, 27 (2009), 5; 637-641 doi:10.1016/j.jmgm.2008.10.00 (međunarodna recenzija, članak, znanstveni)


Naslov
Graphical representation of proteins as four-color maps and their numerical characterization

Autori
Randić, Milan ; Vukičević, Damir ; Pisanski, Tomaž ; Vikić-Topić, Dražen ; Plavšić, Dejan

Izvornik
Journal of molecular graphics & modelling (1093-3263) 27 (2009), 5; 637-641

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
Proteins; four-color map; graphical representation

Sažetak
We put forward a novel compact 2-D graphical representation of proteins based on the concept of virtual genetic code and a four-color map. The novel graphical representation uniquely represents proteins and allows one to easily and quickly visually observe and inspect similarity/dissimilarity between them. It also leads to a novel protein descriptor, a 10-dimensional vector derived from a novel structure matrix S associated with the map. The introduced numerical characterization of proteins is not only useful for their comparative study, but also for cataloguing information on a single protein. The approach is illustrated with the A chain of human insulin and the A chain of human insulin analogue glargine.

Izvorni jezik
Engleski

Znanstvena područja
Matematika, Kemija

Napomena
Rad je prezentiran na skupu XXIX European Congress on Molecular Spectroscopy (EUCMOS 2008), održanom od 31.08.-05.09.2008., Opatija, Hrvatska ; objavljen u Knjizi sažetaka /Musić, Svetozar ; Ristić, Mira ; Krehula Stjepko (ur.). - Zagreb : Školska knjiga , 2008. str. 84-84 ; ISBN 978-953-6690-76-3.



POVEZANOST RADA


Projekt / tema
037-0000000-2779 - Diskretna matematika i primjene (Dragutin Svrtan, )
098-0982929-2917 - Spektroskopija NMR i modeliranje bioaktivnih molekula (Dejan Plavšić, )
177-0000000-0884 - Diskretni matematički modeli u kemiji (Damir Vukičević, )

Ustanove
Prirodoslovno-matematički fakultet, Matematički odjel, Zagreb,
Institut "Ruđer Bošković", Zagreb,
Prirodoslovno-matematički fakultet, Split

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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