Napredna pretraga

Pregled bibliografske jedinice broj: 374932

Combined 3D QSAR and QM/MM Study of the Burkholderia cepacia Lipase Enantioselectivity


Tomić, Sanja
Combined 3D QSAR and QM/MM Study of the Burkholderia cepacia Lipase Enantioselectivity // Protein Design and Evolution for Biocatalysis, Book of Abstracts
Sant Feliu de Guixols, Španjolska, 2008. (predavanje, nije recenziran, sažetak, ostalo)


Naslov
Combined 3D QSAR and QM/MM Study of the Burkholderia cepacia Lipase Enantioselectivity

Autori
Tomić, Sanja

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, ostalo

Izvornik
Protein Design and Evolution for Biocatalysis, Book of Abstracts / - , 2008

Skup
ESF-EMBO Symposium Protein Design and Evolution for Biocatalysis

Mjesto i datum
Sant Feliu de Guixols, Španjolska, 25-30. 10.2008

Vrsta sudjelovanja
Predavanje

Vrsta recenzije
Nije recenziran

Ključne riječi
Lipase; modelling; QM/MM

Sažetak
We used two different approaches: 3D QSAR and QM/MM to investigate the high enantioselectivity of Burkholderia cepacia lipase (BCL) toward secondary alcohols. First we identified possible binding modes for the series of the secondary alcohol esters in the BCL active site and derived the 3D QSAR model for predicting BCL enantioselectivity towards secondary alcohol. Afterwards, we investigate possibilities for chemical transformation of the secondary alcohol (R, S)-1-phenoxy-2-hydroxybutane (1) and its ester (E1) for which extremely high enatiomeric radio was measured (E> 200). Starting from the four covalent complexes with different orientation of the substrate (two determined by molecular modelling, 1 and two derived from the X-ray structure of the BCL-inhibitor complex2, 4), we modelled the ester (S and R ─ E1) hydrolysis and the alcohol (S and R ─ 1) esterification using quantum chemical3 (QM) and QM/MM4 methods. The calculations revealed that ester release is possible from all four covalent complexes. Alcohol release from the BCL-E1 complex in which the S-substrate is bound in the same manner as the S-inhibitor in the crystal structure however is not possible. The results proved that the productive binding modes of the secondary alcohol enantiomers were correctly predicted by molecular modelling and gave confirmation of the reliability of our 3D QSAR model. References: (1) Tomić, S. ; Kojić-Prodić, . Jour. Mol. Graph. Mod. 21 241-252, 2002. (2) Luić, M. ; Tomić, S. ; Leščić, I. ; Ljubović, E. ; Šepac, D. ; Šunjić, V. ; Vitale, L. ; Saenger, W. ; Kojić-Prodić, B. Eur. J. Biochem. 268, 3964– 3973, 2001. (3) Tomić, S. ; Ramek, M. Jour. Mol. Catal. B: Enzym. 38, 139-147, 2006. (4) Luić M., Stefanić Z., Ceilinger I., Hodošček M., Janežić D., Lenac T., Leščić I., Šepac D., Tomić S., J. Phys. Chem B., 112 (2008), 4876-4883

Izvorni jezik
Engleski

Znanstvena područja
Fizika



POVEZANOST RADA


Projekt / tema
098-1191344-2860 - Proučavanje biomakromolekula računalnim metodama i razvoj novih algoritama (Sanja Tomić, )

Ustanove
Institut "Ruđer Bošković", Zagreb

Autor s matičnim brojem:
Sanja Tomić, (113604)