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Pregled bibliografske jedinice broj: 371596

Denoising Raman Spectra of Biological Samples Using Wavelets


Gamulin, Ozren; Kosović, Marin; Balarin, Maja; Krilov, Dubravka; Brnjas-Kraljević, Jasminka
Denoising Raman Spectra of Biological Samples Using Wavelets // EUCMOS 2008 XXIX European Congress on molecular spectroscopy Book of Abstracts / Musić, Svetozar ; Ristić, Mira ; Krehula, Stjepko (ur.).
Opatija, 2008. str. 303-303 (poster, međunarodna recenzija, sažetak, znanstveni)


CROSBI ID: 371596 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Denoising Raman Spectra of Biological Samples Using Wavelets

Autori
Gamulin, Ozren ; Kosović, Marin ; Balarin, Maja ; Krilov, Dubravka ; Brnjas-Kraljević, Jasminka

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, znanstveni

Izvornik
EUCMOS 2008 XXIX European Congress on molecular spectroscopy Book of Abstracts / Musić, Svetozar ; Ristić, Mira ; Krehula, Stjepko - Opatija, 2008, 303-303

ISBN
978-953-6690-76-3

Skup
EUCMOS 2008 XXIX European Congress on molecular spectroscop

Mjesto i datum
Opatija, Hrvatska, 31.8-5.9.2008

Vrsta sudjelovanja
Poster

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
Denoising; wavelets; raman spectroscopy

Sažetak
A range of applications of Raman spectroscopy in investigations of biological systems is emerging rapidly. The spectral analysis of these systems is difficult because of their complexity, and the noise superimposed on Raman signals. Increasing the laser power and increasing the number of co-added scans are two standard methods to improve signal to noise (S/N) ratio. However, they are often counter productive. The former destroys the sample, and the latter changes sample properties because of drying. In this work, we use wavelet transform to improve S/N ratio . We apply different wavelet denoising methods (fixed form treshold, SURE, Minimax, Penalize, Wavelet packet) to Raman spectra with different levels of S/N ratio, and analyze their efficiency. Two efficiency criterions were defined. One is the number of preserved vibrational bands in the denoised spectrum in comparison to the referent spectrum. The second criterion is the preservation of relative intensities of vibrational bands in the denoised spectrum. For this purpose, the series of Raman spectra was recorded from the same sample of rat skull bone. Different levels of S/N ratio in the recorded spectra were achieved by varying the number of scans and the laser power. The spectrum with the best S/N ratio was selected as the reference, and its vibrational bands were assigned using second derivatives. Spectra with smaller S/N ratios were denoised with wavelet transformations and their vibrational bands were assigned and compared with the reference. To check the first efficiency criterion we counted how many vibrational bands assigned to the referent spectrum were preserved in the denoised spectra. For second criterion the ratio of integral intensities of PO4 and amid I band was compared between denoised and referent spectra. The efficiency of wavelet denoising was also tested for different wavelet families (Haar, Daubechies, Symlets, Coiflets, BiorSplines, ReverseBior, DMeyer), and compared with standard smoothing methods such as Block Averaging and Savitsky-Golay.

Izvorni jezik
Engleski

Znanstvena područja
Fizika



POVEZANOST RADA


Projekti:
108-1080134-3105 - Mehanizmi narušavanja strukture lipoproteina djelovanjem vanjskih čimbenika (Gamulin, Ozren, MZOS ) ( POIROT)

Ustanove:
Medicinski fakultet, Zagreb


Citiraj ovu publikaciju:

Gamulin, Ozren; Kosović, Marin; Balarin, Maja; Krilov, Dubravka; Brnjas-Kraljević, Jasminka
Denoising Raman Spectra of Biological Samples Using Wavelets // EUCMOS 2008 XXIX European Congress on molecular spectroscopy Book of Abstracts / Musić, Svetozar ; Ristić, Mira ; Krehula, Stjepko (ur.).
Opatija, 2008. str. 303-303 (poster, međunarodna recenzija, sažetak, znanstveni)
Gamulin, O., Kosović, M., Balarin, M., Krilov, D. & Brnjas-Kraljević, J. (2008) Denoising Raman Spectra of Biological Samples Using Wavelets. U: Musić, S., Ristić, M. & Krehula, S. (ur.)EUCMOS 2008 XXIX European Congress on molecular spectroscopy Book of Abstracts.
@article{article, year = {2008}, pages = {303-303}, keywords = {Denoising, wavelets, raman spectroscopy}, isbn = {978-953-6690-76-3}, title = {Denoising Raman Spectra of Biological Samples Using Wavelets}, keyword = {Denoising, wavelets, raman spectroscopy}, publisherplace = {Opatija, Hrvatska} }
@article{article, year = {2008}, pages = {303-303}, keywords = {Denoising, wavelets, raman spectroscopy}, isbn = {978-953-6690-76-3}, title = {Denoising Raman Spectra of Biological Samples Using Wavelets}, keyword = {Denoising, wavelets, raman spectroscopy}, publisherplace = {Opatija, Hrvatska} }




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