engleski

The ClustScan program package architecture

The ClustScan program package was developed as Java client and Linux server application. To develop the Linux server application several programming languages (Java, Perl, PHP, etc.) were used and implemented as a Web service (SOAP) that acts as a wrapper for a number of command-line bioinformatics tools (HMMER, GeneMark, Glimmer, ClustalW, etc.) specific for Linux operating system. On the other hand, for the database (DBMS) implemented within the ClustScan program package the PostgreSQL was used. To develop the backbone of Java client application the eclipse RCP (Rich Client Platform) technology was used featuring fast SWT graphical interface. In the near future we will develop the ClustScan database (CSDB) as a publically available Web application. The CSDB will allow browsing, searching and manipulation of data from polyketide and peptide gene clusters annotated by ClustScan program package using bioinformatics programs such as BLAST, ClustalW, Phylip and others. The ClustScan program package and the CSDB database will offer novel and user friendly approaches for the presentation of the biological data.

ClustScan; program package; Java client; Linux server application; PostgreSQL; eclipse RC (Rich Client Platform)

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