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Pregled bibliografske jedinice broj: 1185676

Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures


Skiljaica, Andreja; Jagić, Mateja; Vuk, Tamara; Leljak Levanić, Dunja; Bauer, Nataša; Markulin, Lucija
Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures // Plant biology, 24 (2022), 2; 367-379 doi:10.1111/plb.13382 (međunarodna recenzija, članak, znanstveni)


CROSBI ID: 1185676 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures

Autori
Skiljaica, Andreja ; Jagić, Mateja ; Vuk, Tamara ; Leljak Levanić, Dunja ; Bauer, Nataša ; Markulin, Lucija

Izvornik
Plant biology (1435-8603) 24 (2022), 2; 367-379

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
arabidopsis thaliana ; RT-qPCR ; elevated temperature ; microarray ; reference genes

Sažetak
Increases in environmental temperature are directly linked to the issue of climate change and are known to significantly disrupt plant growth and development. Studies of gene expression in plants commonly include RT-qPCR but the reliability of the method depends on the use of suitable reference genes for data normalization. Despite this, no reference genes have been validated specifically for experiments in Arabidopsis thaliana employing treatments with elevated temperature. Here, ten genes were selected for expression stability analysis based on the screening of available literature and microarray data from temperature-treated A. thaliana. Expression levels of candidate reference genes were measured in 12-day-old seedlings, rosette leaves and flower buds of 5-week-old A. thaliana plants exposed to five different temperatures (22°C, 27°C, 32°C, 37°C and 42°C) and their expression stabilities were assessed using four statistical algorithms (BestKeeper, geNorm, NormFinder and comparative ΔCq method). This study provides reliable reference genes for use in A. thaliana RT-qPCR expression analyses employing elevated temperature treatments, namely OGIO and PUX7 in seedlings, UBC21 and PUX7 in leaves, TIP41 and UBC21 in buds, and TIP41 and UBC21 in all three tissues combined. Orthologues of these genes can be of potential use in less studied plants, especially agricultural species heavily affected by climate change.

Izvorni jezik
Engleski

Znanstvena područja
Biologija, Poljoprivreda (agronomija)



POVEZANOST RADA


Projekti:
HRZZ-IP-2016-06-6229 - MATH-BTB proteini kao regulatori transkripcije i RNA posredovane metilacije DNA u biljnom razvitku (PHYTOMETHDEV) (Leljak-Levanić, Dunja, HRZZ - 2016-06) ( POIROT)
EK-EFRR-KK.05.1.1.02.0005 - Agrobioraznolikost - osnova za prilagodbu i ublažavanje posljedica klimatskih promjena u poljoprivredi (Goreta Ban, Smiljana; Salopek Sondi, Branka; Bauer, Nataša; Jasprica, Nenad; Kereša, Snježana, EK - KK.05.1.1.02) ( POIROT)

Ustanove:
Prirodoslovno-matematički fakultet, Zagreb

Citiraj ovu publikaciju:

Skiljaica, Andreja; Jagić, Mateja; Vuk, Tamara; Leljak Levanić, Dunja; Bauer, Nataša; Markulin, Lucija
Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures // Plant biology, 24 (2022), 2; 367-379 doi:10.1111/plb.13382 (međunarodna recenzija, članak, znanstveni)
Skiljaica, A., Jagić, M., Vuk, T., Leljak Levanić, D., Bauer, N. & Markulin, L. (2022) Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures. Plant biology, 24 (2), 367-379 doi:10.1111/plb.13382.
@article{article, author = {Skiljaica, Andreja and Jagi\'{c}, Mateja and Vuk, Tamara and Leljak Levani\'{c}, Dunja and Bauer, Nata\v{s}a and Markulin, Lucija}, year = {2022}, pages = {367-379}, DOI = {10.1111/plb.13382}, keywords = {arabidopsis thaliana, RT-qPCR, elevated temperature, microarray, reference genes}, journal = {Plant biology}, doi = {10.1111/plb.13382}, volume = {24}, number = {2}, issn = {1435-8603}, title = {Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures}, keyword = {arabidopsis thaliana, RT-qPCR, elevated temperature, microarray, reference genes} }
@article{article, author = {Skiljaica, Andreja and Jagi\'{c}, Mateja and Vuk, Tamara and Leljak Levani\'{c}, Dunja and Bauer, Nata\v{s}a and Markulin, Lucija}, year = {2022}, pages = {367-379}, DOI = {10.1111/plb.13382}, keywords = {arabidopsis thaliana, RT-qPCR, elevated temperature, microarray, reference genes}, journal = {Plant biology}, doi = {10.1111/plb.13382}, volume = {24}, number = {2}, issn = {1435-8603}, title = {Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures}, keyword = {arabidopsis thaliana, RT-qPCR, elevated temperature, microarray, reference genes} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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