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Pregled bibliografske jedinice broj: 1180545

Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity


ŠIMIĆ, I., ZOREC, T. M., LOJKIĆ, I., KREŠIĆ, N., POLJAK, M. CLIQUET, F., PICARD-MEYER, E., WASNIEWSKI, M., ZRNČIĆ, V., ĆUKUŠIĆ, A., BEDEKOVIĆ, T.
Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity // Viruses-Basel, 12 (2020), 891, 24 doi:10.3390/v12080891 (međunarodna recenzija, članak, znanstveni)


CROSBI ID: 1180545 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity

Autori
ŠIMIĆ, I., ZOREC, T. M., LOJKIĆ, I., KREŠIĆ, N., POLJAK, M. CLIQUET, F., PICARD-MEYER, E., WASNIEWSKI, M., ZRNČIĆ, V., ĆUKUŠIĆ, A., BEDEKOVIĆ, T.

Izvornik
Viruses-Basel (1999-4915) 12 (2020); 891, 24

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
bats ; viral metagenomics ; Croatia ; virus ; diversity

Sažetak
To date, the microbiome, as well as the virome of the Croatian populations of bats, was unknown. Here, we present the results of the first viral metagenomic analysis of guano, feces and saliva (oral swabs) of seven bat species (Myotis myotis, Miniopterus schreibersii, Rhinolophus ferrumequinum, Eptesicus serotinus, Myotis blythii, Myotis nattereri and Myotis emarginatus) conducted in Mediterranean and continental Croatia. Viral nucleic acids were extracted from sample pools, and analyzed using Illumina sequencing. The presence of 63 different viral families representing all seven Baltimore groups were confirmed, most commonly insect viruses likely reflecting the diet of insectivorous bats. Virome compositions of our samples were largely impacted by the sample type: invertebrate-infecting viruses were most frequently found in feces, bacterial viruses in guano, whereas vertebrate-infecting viruses were most common in swabs. Most vertebrate-infecting virus sequences were assigned to retroviruses, parvoviruses, iridoviruses, and poxviruses. We further report the complete genome sequence of a novel adeno-associated virus, densovirus and a near complete length genome sequence of a novel iflavirus. Additionally, one of the most interesting findings in this study was the difference in viromes between two contrasting habitats, the continental and Mediterranean Croatia.

Izvorni jezik
Engleski

Znanstvena područja
Interdisciplinarne prirodne znanosti, Javno zdravstvo i zdravstvena zaštita, Veterinarska medicina



POVEZANOST RADA


Projekti:
UIP-2014-09-8513 - Aktivni nadzor bjesnoće u šišmiša-bitan faktor za procjenu buduće prijetnje (BatsRabTrack) (Bedeković, Tomislav, HRZZ - 2014-09) ( POIROT)

Ustanove:
Hrvatski veterinarski institut, Zagreb

Profili:

Avatar Url Tomislav Bedeković (autor)

Avatar Url Nina Krešić (autor)

Avatar Url Ivana Šimić (autor)

Avatar Url Ivana Lojkić (autor)

Poveznice na cjeloviti tekst rada:

doi doi.org

Citiraj ovu publikaciju:

ŠIMIĆ, I., ZOREC, T. M., LOJKIĆ, I., KREŠIĆ, N., POLJAK, M. CLIQUET, F., PICARD-MEYER, E., WASNIEWSKI, M., ZRNČIĆ, V., ĆUKUŠIĆ, A., BEDEKOVIĆ, T.
Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity // Viruses-Basel, 12 (2020), 891, 24 doi:10.3390/v12080891 (međunarodna recenzija, članak, znanstveni)
ŠIMIĆ, I., ZOREC, T. M., LOJKIĆ, I., KREŠIĆ, N., POLJAK, M. CLIQUET, F., PICARD-MEYER, E., WASNIEWSKI, M., ZRNČIĆ, V., ĆUKUŠIĆ, A., BEDEKOVIĆ, T. (2020) Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity. Viruses-Basel, 12, 891, 24 doi:10.3390/v12080891.
@article{article, year = {2020}, pages = {24}, DOI = {10.3390/v12080891}, chapter = {891}, keywords = {bats, viral metagenomics, Croatia, virus, diversity}, journal = {Viruses-Basel}, doi = {10.3390/v12080891}, volume = {12}, issn = {1999-4915}, title = {Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity}, keyword = {bats, viral metagenomics, Croatia, virus, diversity}, chapternumber = {891} }
@article{article, year = {2020}, pages = {24}, DOI = {10.3390/v12080891}, chapter = {891}, keywords = {bats, viral metagenomics, Croatia, virus, diversity}, journal = {Viruses-Basel}, doi = {10.3390/v12080891}, volume = {12}, issn = {1999-4915}, title = {Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity}, keyword = {bats, viral metagenomics, Croatia, virus, diversity}, chapternumber = {891} }

Časopis indeksira:


  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


Citati:





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