Setting a baseline for global urban virome surveillance in sewage (CROSBI ID 284436)
Prilog u časopisu | izvorni znanstveni rad | međunarodna recenzija
Podaci o odgovornosti
Nieuwenhuijse, David F. ; Oude Munnink, Bas B. ; Phan, My V. T. ; Hendriksen, Rene S. ; Bego, Artan ; Rees, Catherine ; Heather Neilson, Elizabeth ; Coventry, Kris ; Collignon, Peter ; Allerberger, Franz ; Rahube, Teddie O. ; Oliveira1, Guilherme ; Ivanov, Ivan ; Sopheak, Thet ; Vuthy, Yith ; Yost, Christopher K. ; Tabo, Djim‑adjim ; Cuadros‑Orellana, Sara ; Ke, Changwen ; Zheng, Huanying ; Baisheng, Li ; Jiao, Xiaoyang ; Donado‑Godoy, Pilar ; Julien Coulibaly, Kalpy ; Hrenović, Jasna ; Jergović, Matijana ; Karpíšková, Renáta ; Elsborg, Bodil ; Legesse, Mengistu ; Eguale, Tadesse ; Heikinheimo, Annamari ; Eduardo Villacis, Jose ; Sanneh, Bakary ; Malania, Lile ; Nitsche, Andreas ; Brinkmann, Annika ; Kosi Setsoafia Saba, Courage ; Kocsis, Bela ; Solymosi, Norbert ; Thorsteinsdottir, Thorunn R. ; Hatha, Abdulla Mohamed ; Alebouyeh, Masoud ; Morris, Dearbhaile ; O’Connor, Louise ; Cormican, Martin ; Moran‑Gilad, Jacob ; Battisti, Antonio ; Alba, Patricia ; Shakenova, Zeinegul ; Kiiyukia, Ciira ; Ng’eno, Eric ; Raka, Lul ; Bērziņš, Aivars ; Avsejenko, Jeļena ; Bartkevics, Vadims ; Penny, Christian ; Rajandas, Heraa ; Parimannan, Sivachandran ; Vella Haber, Malcolm ; Pal, Pushkar ; Schmitt, Heike ; van Passel, Mark ; van de Schans, Milou G.M. ; Zuidema, Tina ; Jeunen, Gert‑Jan ; Gemmell, Neil ; Fashae, Kayode ; Louise Wester, Astrid ; Holmstad, Rune ; Hasan, Rumina ; Shakoor, Sadia ; Luz Zamudio Rojas, Maria ; Wasyl, Dariusz ; Bosevska Golubinka ; Kochubovski, Mihail ; Radu, Cojocaru ; Gassama, Amy ; Radosavljevic, Vladimir ; Tay, Moon Y.F. ; Zuniga‑Montanez, Rogelio ; Wuertz, Stefan ; Gavačová, Dagmar ; Trkov, Marija ; Keddy, Karen ; Esterhuyse, Kerneels ; Cerdà‑Cuéllar, Marta ; Pathirage, Sujatha ; Larsson, D.G.Joakim ; Norrgren, Leif ; Örn, Stefan ; Van der Heijden, Tanja ; Kumburu, Happiness Houka ; de RodaHusman, Ana Maria ; Njanpop‑Lafourcade, Berthe‑Marie ; Bidjada, Pawou ; Nikiema‑Pessinaba, Somtinda Christelle ; Levent, Belkis ; Scott Meschke, John ; Koren Beck, Nicola ; Van Dang, Chinh ; Minh Nguyen Tran, Doan ; Do Phuc, Nguyen ; Kwenda, Geoffrey ; Munk, Patrick ; Venkatakrishnan, Shweta ; Aarestrup, Frank M. ; Cotton, Matthew ; Koopmans, Marion P. G.
The Global Sewage Surveillance project consortium
engleski
Setting a baseline for global urban virome surveillance in sewage
The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective.
metagenomic sequencing ; sewage ; viral pathogens ; virome ; virus
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