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Pregled bibliografske jedinice broj: 1078570

Sequence composition underlying centromeric and heterochromatic genome compartments of the Pacific oyster Crassostrea gigas


Tunjić Cvitanić, Monika; Vojvoda Zeljko, Tanja; Pasantes, Juan J.; García-Souto, Daniel; Gržan, Tena; Despot-Slade, Evelin; Plohl, Miroslav; Šatović, Eva
Sequence composition underlying centromeric and heterochromatic genome compartments of the Pacific oyster Crassostrea gigas // Genes, 11 (2020), 695; 695, 20 doi:10.3390/genes11060695 (međunarodna recenzija, članak, znanstveni)


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Naslov
Sequence composition underlying centromeric and heterochromatic genome compartments of the Pacific oyster Crassostrea gigas

Autori
Tunjić Cvitanić, Monika ; Vojvoda Zeljko, Tanja ; Pasantes, Juan J. ; García-Souto, Daniel ; Gržan, Tena ; Despot-Slade, Evelin ; Plohl, Miroslav ; Šatović, Eva

Izvornik
Genes (2073-4425) 11 (2020), 695; 695, 20

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
centromere ; CenH3 ; heterochromatin ; H3K9me3 ; chromatin immunoprecipitation ; repetitive DNA ; Bivalves ; Crassostrea gigas

Sažetak
Segments of the genome enriched in repetitive sequences still present a challenge and are omitted in genome assemblies. For that reason, the exact composition of DNA sequences underlying the heterochromatic regions and the active centromeres are still unexplored for many organisms. The centromere is a crucial region of eukaryotic chromosomes responsible for the accurate segregation of genetic material. The typical landmark of centromere chromatin is the rapidly-evolving variant of the histone H3, CenH3, while DNA sequences packed in constitutive heterochromatin are associated with H3K9me3-modified histones. In the Pacific oyster Crassostrea gigas we identified its centromere histone variant, Cg-CenH3, that shows stage-specific distribution in gonadal cells. In order to investigate the DNA composition of genomic regions associated with the two specific chromatin types, we employed chromatin immunoprecipitation followed by high-throughput next-generation sequencing of the Cg-CenH3- and H3K9me3-associated sequences. CenH3-associated sequences were assigned to six groups of repetitive elements, while H3K9me3-associated-ones were assigned only to three. Those associated with CenH3 indicate the lack of uniformity in the chromosomal distribution of sequences building the centromeres, being also in the same time dispersed throughout the genome. The heterochromatin of C. gigas exhibited general paucity and limited chromosomal localization as predicted, with H3K9me3-associated sequences being predominantly constituted of DNA transposons.

Izvorni jezik
Engleski

Znanstvena područja
Biologija



POVEZANOST RADA


Projekti:
IP-2014-09-3183 - Centromerna genomika beskralježnjaka (CENGEN) (Plohl, Miroslav, HRZZ - 2014-09) ( POIROT)

Ustanove:
Institut "Ruđer Bošković", Zagreb

Citiraj ovu publikaciju

Tunjić Cvitanić, Monika; Vojvoda Zeljko, Tanja; Pasantes, Juan J.; García-Souto, Daniel; Gržan, Tena; Despot-Slade, Evelin; Plohl, Miroslav; Šatović, Eva
Sequence composition underlying centromeric and heterochromatic genome compartments of the Pacific oyster Crassostrea gigas // Genes, 11 (2020), 695; 695, 20 doi:10.3390/genes11060695 (međunarodna recenzija, članak, znanstveni)
Tunjić Cvitanić, M., Vojvoda Zeljko, T., Pasantes, J., García-Souto, D., Gržan, T., Despot-Slade, E., Plohl, M. & Šatović, E. (2020) Sequence composition underlying centromeric and heterochromatic genome compartments of the Pacific oyster Crassostrea gigas. Genes, 11 (695), 695, 20 doi:10.3390/genes11060695.
@article{article, year = {2020}, pages = {20}, DOI = {10.3390/genes11060695}, chapter = {695}, keywords = {centromere, CenH3, heterochromatin, H3K9me3, chromatin immunoprecipitation, repetitive DNA, Bivalves, Crassostrea gigas}, journal = {Genes}, doi = {10.3390/genes11060695}, volume = {11}, number = {695}, issn = {2073-4425}, title = {Sequence composition underlying centromeric and heterochromatic genome compartments of the Pacific oyster Crassostrea gigas}, keyword = {centromere, CenH3, heterochromatin, H3K9me3, chromatin immunoprecipitation, repetitive DNA, Bivalves, Crassostrea gigas}, chapternumber = {695} }
@article{article, year = {2020}, pages = {20}, DOI = {10.3390/genes11060695}, chapter = {695}, keywords = {centromere, CenH3, heterochromatin, H3K9me3, chromatin immunoprecipitation, repetitive DNA, Bivalves, Crassostrea gigas}, journal = {Genes}, doi = {10.3390/genes11060695}, volume = {11}, number = {695}, issn = {2073-4425}, title = {Sequence composition underlying centromeric and heterochromatic genome compartments of the Pacific oyster Crassostrea gigas}, keyword = {centromere, CenH3, heterochromatin, H3K9me3, chromatin immunoprecipitation, repetitive DNA, Bivalves, Crassostrea gigas}, chapternumber = {695} }

Časopis indeksira:


  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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