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izvor podataka: crosbi

Leitmotif: protein motif scanning 2.0 (CROSBI ID 281637)

Prilog u časopisu | izvorni znanstveni rad | međunarodna recenzija

Biđin, Siniša ; Vujaklija, Ivan ; Paradžik, Tina ; Bielen, Ana ; Vujaklija, Dušica Leitmotif: protein motif scanning 2.0 // Bioinformatics, 36 (2020), 11; 3566-3567. doi: 10.1093/bioinformatics/btaa133

Podaci o odgovornosti

Biđin, Siniša ; Vujaklija, Ivan ; Paradžik, Tina ; Bielen, Ana ; Vujaklija, Dušica

engleski

Leitmotif: protein motif scanning 2.0

Motivation Motif-HMM (mHMM) scanning has been shown to possess unique advantages over standardly used sequence-profile search methods (e.g. HMMER, PSI-BLAST) since it is particularly well-suited to discriminate proteins with variations inside conserved motifs (e.g. family subtypes) or motifs lacking essential residues (false positives, e.g. pseudoenzymes). Results In order to make mHMM widely accessible to a broader scientific community, we developed Leitmotif, an mHMM web application with many parametrization options easily accessible through intuitive interface. Substantial improvement of performance (ROC scores) was obtained by using two novel parameters. To the best of our knowledge, Leitmotif is the only available mHMM application

Leitmotif server ; protein motif scanning

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Podaci o izdanju

36 (11)

2020.

3566-3567

objavljeno

1367-4803

1367-4803

10.1093/bioinformatics/btaa133

Povezanost rada

Biologija, Matematika

Poveznice
Indeksiranost