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Pregled bibliografske jedinice broj: 1060208

QM/MM study of the inactivation of the B12-dependent dehydratases by substrate glycerol


(Allison University, Sackville, Canada ; The University of Sydney, Sydney, Australia) Bilić, Luka; Barić, Danijela; Sandala, M. Gregory; Radom, Leo; Kovačević, Borislav
QM/MM study of the inactivation of the B12-dependent dehydratases by substrate glycerol // International Congress Engineering of Advanced Materials (ICEAM)
Erlangen, Njemačka, 2017. (poster, podatak o recenziji nije dostupan, neobjavljeni rad, znanstveni)


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Naslov
QM/MM study of the inactivation of the B12-dependent dehydratases by substrate glycerol

Autori
Bilić, Luka ; Barić, Danijela ; Sandala, M. Gregory ; Radom, Leo ; Kovačević, Borislav

Kolaboracija
Allison University, Sackville, Canada ; The University of Sydney, Sydney, Australia

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, neobjavljeni rad, znanstveni

Skup
International Congress Engineering of Advanced Materials (ICEAM)

Mjesto i datum
Erlangen, Njemačka, 10.11.-12.11.2017

Vrsta sudjelovanja
Poster

Vrsta recenzije
Podatak o recenziji nije dostupan

Ključne riječi
B12-dependent dehydratases, inhibition, reaction mechanism

Sažetak
Some bacteria use alcohol as a source of carbon and energy in order to grow in anaerobic conditions via fermentation. The fermentation of alcohol starts with the dehydration (Figure 1). This reaction is catalyzed by two enzymes: glycerol dehydratase (GDH) and diol dehydratase (DDH), which use coenzyme B12 as an essential cofactor.[1] As with most B12-dependent reactions, the reaction mechanism of these two enzymes involves a formation of radical intermediates. It is known that both GDH and DDH undergo substrate-induced inactivation by glycerol, the rate of which is higher for DDH than for the GDH.[2] Possible inactivation mechanism is recently reported by Yoshizawa et al. It states that glycerol C1 radical can abstract hydrogen from C3 hydroxyl group forming unstable O-centered radical which undergoes homolytic cleavage to form formaldehyde and glycol radical.[3, 4] In this work we propose and explore another mechanism of inactivation for GDH and DDH that does not require energetically expensive intramolecular hydrogen transfer from hydroxyl group to C1 radical. The energy profiles of the proposed inactivation mechanism for both enzymes yielded activation energies that are more consistent with the experimental data providing better explanation to underlying mechanism for the unusual “suicidal” inactivation of GDH and DDH

Izvorni jezik
Engleski

Znanstvena područja
Kemija



POVEZANOST RADA


Projekti:
HRZZ-IP-2013-11-8238 - Računalna rješenja u bioznanostima: Značaj savitljivosti molekula (CompSoLS-MolFlex) (Matthew Smith, David, HRZZ - 2013-11) ( POIROT)

Ustanove:
Institut "Ruđer Bošković", Zagreb

Profili:

Avatar Url Luka Bilić (autor)

Avatar Url Borislav Kovačević (autor)

Avatar Url Danijela Barić (autor)


Citiraj ovu publikaciju

(Allison University, Sackville, Canada ; The University of Sydney, Sydney, Australia) Bilić, Luka; Barić, Danijela; Sandala, M. Gregory; Radom, Leo; Kovačević, Borislav
QM/MM study of the inactivation of the B12-dependent dehydratases by substrate glycerol // International Congress Engineering of Advanced Materials (ICEAM)
Erlangen, Njemačka, 2017. (poster, podatak o recenziji nije dostupan, neobjavljeni rad, znanstveni)
(Allison University, Sackville, Canada ; The University of Sydney, Sydney, Australia) (Allison University, Sackville, Canada, The University of Sydney, Sydney, Australia) Bilić, Luka, Barić, D., Sandala, M., Radom, L. & Kovačević, B. (2017) QM/MM study of the inactivation of the B12-dependent dehydratases by substrate glycerol. U: International Congress Engineering of Advanced Materials (ICEAM).
@article{article, year = {2017}, keywords = {B12-dependent dehydratases, inhibition, reaction mechanism}, title = {QM/MM study of the inactivation of the B12-dependent dehydratases by substrate glycerol}, keyword = {B12-dependent dehydratases, inhibition, reaction mechanism}, publisherplace = {Erlangen, Njema\v{c}ka} }
@article{article, year = {2017}, keywords = {B12-dependent dehydratases, inhibition, reaction mechanism}, title = {QM/MM study of the inactivation of the B12-dependent dehydratases by substrate glycerol}, keyword = {B12-dependent dehydratases, inhibition, reaction mechanism}, publisherplace = {Erlangen, Njema\v{c}ka} }




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