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Pregled bibliografske jedinice broj: 1052820

Yet another de novo genome assembler


Vaser, Robert; Šikić, Mile
Yet another de novo genome assembler // 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA)
Dubrovnik, Hrvatska, 2019. str. 147-151 doi:10.1109/ISPA.2019.8868909 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), ostalo)


CROSBI ID: 1052820 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Yet another de novo genome assembler

Autori
Vaser, Robert ; Šikić, Mile

Vrsta, podvrsta i kategorija rada
Radovi u zbornicima skupova, cjeloviti rad (in extenso), ostalo

Skup
2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA)

Mjesto i datum
Dubrovnik, Hrvatska, 23-25.09.2019

Vrsta sudjelovanja
Predavanje

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
de novo genome assembly, long reads, read classification

Sažetak
Advances in sequencing technologies have pushed the limits of genome assemblies beyond imagination. The sheer amount of long read data that is being generated enables the assembly for even the largest and most complex organism for which efficient algorithms are needed. We present a new tool, called Ra, for de novo genome assembly of long uncorrected reads. It is a fast and memory friendly assembler based on sequence classification and assembly graphs, developed with large genomes in mind. It is freely available at https://github.com/lbcb-sci/ra.

Izvorni jezik
Engleski

Znanstvena područja
Računarstvo



POVEZANOST RADA


Projekti:
HRZZ-UIP-2013-11-7353 - Algoritmi za analizu slijeda genoma (AGESA) (Šikić, Mile, HRZZ - 2013-11) ( POIROT)
KK.01.1.1.01.0009 - Napredne metode i tehnologije u znanosti o podatcima i kooperativnim sustavima (EK )
HRZZ-IP-2018-01-5886 - De novo sastavljanje genoma i metagenoma (SIGMA) (Šikić, Mile, HRZZ - 2018-01) ( POIROT)

Ustanove:
Fakultet elektrotehnike i računarstva, Zagreb

Profili:

Avatar Url Mile Šikić (autor)

Avatar Url Robert Vaser (autor)

Citiraj ovu publikaciju

Vaser, Robert; Šikić, Mile
Yet another de novo genome assembler // 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA)
Dubrovnik, Hrvatska, 2019. str. 147-151 doi:10.1109/ISPA.2019.8868909 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), ostalo)
Vaser, R. & Šikić, M. (2019) Yet another de novo genome assembler. U: 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA) doi:10.1109/ISPA.2019.8868909.
@article{article, year = {2019}, pages = {147-151}, DOI = {10.1109/ISPA.2019.8868909}, keywords = {de novo genome assembly, long reads, read classification}, doi = {10.1109/ISPA.2019.8868909}, title = {Yet another de novo genome assembler}, keyword = {de novo genome assembly, long reads, read classification}, publisherplace = {Dubrovnik, Hrvatska} }
@article{article, year = {2019}, pages = {147-151}, DOI = {10.1109/ISPA.2019.8868909}, keywords = {de novo genome assembly, long reads, read classification}, doi = {10.1109/ISPA.2019.8868909}, title = {Yet another de novo genome assembler}, keyword = {de novo genome assembly, long reads, read classification}, publisherplace = {Dubrovnik, Hrvatska} }

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