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Pregled bibliografske jedinice broj: 1040020

Terminal-Repeat Retrotransposons in Miniature (TRIMs) in bivalves


Šatović, Eva; Luchetti, Andrea; Pasantes, Juan J.; García-Souto, Daniel; Cedilak, Andrea; Mantovani, Barbara; Plohl, Miroslav
Terminal-Repeat Retrotransposons in Miniature (TRIMs) in bivalves // Scientific reports, 9 (2019), 19962, 10 doi:10.1038/s41598-019-56502-y (međunarodna recenzija, članak, znanstveni)


CROSBI ID: 1040020 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Terminal-Repeat Retrotransposons in Miniature (TRIMs) in bivalves

Autori
Šatović, Eva ; Luchetti, Andrea ; Pasantes, Juan J. ; García-Souto, Daniel ; Cedilak, Andrea ; Mantovani, Barbara ; Plohl, Miroslav

Izvornik
Scientific reports (2045-2322) 9 (2019); 19962, 10

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
bivalves ; TRIM ; LTR retrotransposon ; horizontal transfer

Sažetak
Terminal repeat retrotransposons in miniature (TRIMs) are small non-autonomous LTR retrotransposons consisting of two terminal direct repeats surrounding a short internal domain. The detection and characterization of these elements has been mainly limited to plants. Here we present the first finding of a TRIM element in bivalves, and among the first known in the kingdom Animalia. Class Bivalvia has high ecological and commercial importance in marine ecosystems and aquaculture, and, in recent years, an increasing number of genomic studies has addressed to these organisms. We have identified biv-TRIM in several bivalve species: Donax trunculus, Ruditapes decussatus, R. philippinarum, Venerupis corrugata, Polititapes rhomboides, Venus verrucosa, Dosinia exoleta, Glycymeris glycymeris, Cerastoderma edule, Magallana gigas, Mytilus galloprovincialis. biv-TRIM has several characteristics typical for this group of elements, exhibiting different variations. In addition to canonically structured elements, solo-TDRs and tandem repeats were detected. The presence of this element in the genome of each species is <1%. The phylogenetic analysis showed a complex clustering pattern of biv-TRIM elements, and indicates the involvement of horizontal transfer in the spreading of this element.

Izvorni jezik
Engleski

Znanstvena područja
Biologija



POVEZANOST RADA


Ustanove
Institut "Ruđer Bošković", Zagreb

Profili:

Avatar Url Andrea Cedilak (autor)

Avatar Url Miroslav Plohl (autor)

Avatar Url Eva Šatović (autor)

Citiraj ovu publikaciju

Šatović, Eva; Luchetti, Andrea; Pasantes, Juan J.; García-Souto, Daniel; Cedilak, Andrea; Mantovani, Barbara; Plohl, Miroslav
Terminal-Repeat Retrotransposons in Miniature (TRIMs) in bivalves // Scientific reports, 9 (2019), 19962, 10 doi:10.1038/s41598-019-56502-y (međunarodna recenzija, članak, znanstveni)
Šatović, E., Luchetti, A., Pasantes, J., García-Souto, D., Cedilak, A., Mantovani, B. & Plohl, M. (2019) Terminal-Repeat Retrotransposons in Miniature (TRIMs) in bivalves. Scientific reports, 9, 19962, 10 doi:10.1038/s41598-019-56502-y.
@article{article, year = {2019}, pages = {10}, DOI = {10.1038/s41598-019-56502-y}, chapter = {19962}, keywords = {bivalves, TRIM, LTR retrotransposon, horizontal transfer}, journal = {Scientific reports}, doi = {10.1038/s41598-019-56502-y}, volume = {9}, issn = {2045-2322}, title = {Terminal-Repeat Retrotransposons in Miniature (TRIMs) in bivalves}, keyword = {bivalves, TRIM, LTR retrotransposon, horizontal transfer}, chapternumber = {19962} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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